Basic Information
Locus ID:
pistato.v30179330
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the glycosyl hydrolase 18 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr4 | 1286934 | 1288486 | + | pistato.v30179330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.46 | 40,484.21 Da | 32.21 | 81.01 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02879 | GH18_plant_chitinase_class_V | 11 | 349 | 1.03052E-152 | - |
| Pfam | PF00704 | Glycosyl hydrolases family 18 | 16 | 343 | 1.1E-73 | IPR001223 |
| SUPERFAMILY | SSF51445 | (Trans)glycosidases | 17 | 346 | 5.52E-69 | IPR017853 |
| SUPERFAMILY | SSF54556 | Chitinase insertion domain | 249 | 314 | 1.3E-10 | IPR029070 |
| Gene3D | G3DSA:3.10.50.10 | - | 248 | 314 | 6.5E-98 | IPR029070 |
| Gene3D | G3DSA:3.20.20.80 | Glycosidases | 31 | 342 | 6.5E-98 | - |
| SMART | SM00636 | 2g34 | 13 | 343 | 1.1E-91 | IPR011583 |
| ProSiteProfiles | PS51910 | Glycosyl hydrolases family 18 (GH18) domain profile. | 13 | 359 | 66.652672 | IPR001223 |
| ProSitePatterns | PS01095 | Glycosyl hydrolases family 18 (GH18) active site signature. | 119 | 127 | - | IPR001579 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G19810.1 | Glycosyl hydrolase family protein with chitinase insertion domain. | 0 |
| RefSeq | XP_031280481.1 | class V chitinase CHIT5b-like [Pistacia vera] | 0 |
| A0A072UR65 | Class V chitinase CHIT5b OS=Medicago truncatula OX=3880 GN=CHIT5B PE=1 SV=1 | 0 | |
| TrEMBL | A0A067F7C2 | GH18 domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g040415mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology