Basic Information
Locus ID:
pistato.v30176370
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 47306495 | 47309280 | - | pistato.v30176370 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 22,977.44 Da | 64.20 | 67.70 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 86 | 138 | 6.59035E-11 | - |
| Pfam | PF12906 | RING-variant domain | 86 | 137 | 9.1E-10 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 83 | 140 | 7.3E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 71 | 148 | 7.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 85 | 138 | 8.5E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 78 | 144 | 18.606422 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_031263669.1 | uncharacterized protein LOC116121904 [Pistacia vera] | 0 |
| TrEMBL | A0A5C7GYV4 | RING-CH-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_025748 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology