Basic Information
Locus ID:
pistato.v30174400
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 45266665 | 45270888 | + | pistato.v30174400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.47 | 68,916.46 Da | 36.32 | 105.49 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 250 | 292 | 8.90118E-29 | - |
| Pfam | PF04564 | U-box domain | 246 | 316 | 1.8E-21 | IPR003613 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 456 | 494 | 1.2E-5 | IPR000225 |
| Pfam | PF00514 | Armadillo/beta-catenin-like repeat | 373 | 412 | 6.4E-11 | IPR000225 |
| SUPERFAMILY | SSF48371 | ARM repeat | 343 | 618 | 5.04E-48 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 246 | 321 | 6.31E-31 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 329 | 624 | 1.1E-54 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 9 | 119 | 3.1E-9 | IPR036537 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 244 | 319 | 6.2E-31 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 249 | 312 | 1.4E-35 | IPR003613 |
| SMART | SM00185 | arm_5 | 455 | 495 | 0.24 | IPR000225 |
| SMART | SM00185 | arm_5 | 373 | 413 | 8.6E-7 | IPR000225 |
| SMART | SM00185 | arm_5 | 496 | 536 | 28.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 414 | 454 | 0.032 | IPR000225 |
| SMART | SM00185 | arm_5 | 537 | 577 | 440.0 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 384 | 426 | 14.1924 | IPR000225 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 425 | 467 | 8.6974 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 245 | 319 | 44.707935 | IPR003613 |
| Coils | Coil | Coil | 96 | 116 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54850.1 | plant U-box 14. Encodes a protein with a typical U-box domain followed by an Armadillo repeat region, a domain organization that is frequently found in plant U-box proteins. Displays ubiquitin ligase activity in vitro. | 0 |
| RefSeq | XP_031257350.1 | LOW QUALITY PROTEIN: U-box domain-containing protein 14 [Pistacia vera] | 0 |
| Q8VZ40 | U-box domain-containing protein 14 OS=Arabidopsis thaliana OX=3702 GN=PUB14 PE=1 SV=1 | 0 | |
| TrEMBL | V4TIZ6 | RING-type E3 ubiquitin transferase OS=Citrus clementina OX=85681 GN=CICLE_v10030962mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology