Basic Information
Locus ID:
pistato.v30173450
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
SERK1
Description:
Belongs to the protein kinase superfamily. Ser Thr protein kinase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 42939827 | 42946211 | + | pistato.v30173450 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.57 | 68,808.20 Da | 39.60 | 97.18 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14664 | STK_BAK1_like | 307 | 578 | 3.09544E-165 | - |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 65 | 3.7E-10 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 302 | 573 | 3.6E-44 | IPR000719 |
| Pfam | PF13855 | Leucine rich repeat | 93 | 152 | 1.2E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 189 | 1.19E-40 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 280 | 576 | 4.78E-79 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 270 | 377 | 7.8E-40 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 378 | 595 | 6.4E-71 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 211 | 6.9E-64 | IPR032675 |
| SMART | SM00220 | serkin_6 | 301 | 575 | 5.2E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 301 | 588 | 36.640289 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 424 | 436 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 307 | 329 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71830.1 | somatic embryogenesis receptor-like kinase 1. Plasma membrane LRR receptor-like serine threonine kinase expressed during embryogenesis in locules until stage 6 anthers, with higher expression in the tapetal cell layer. SERK1 and SERK2 receptor kinases function redundantly as an important control point for sporophytic development controlling male gametophyte production. later | 0 |
| RefSeq | XP_031281369.1 | somatic embryogenesis receptor kinase 2-like [Pistacia vera] | 0 |
| Q94AG2 | Somatic embryogenesis receptor kinase 1 OS=Arabidopsis thaliana OX=3702 GN=SERK1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5B7BL50 | Protein kinase domain-containing protein OS=Davidia involucrata OX=16924 GN=Din_039153 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology