Basic Information
Locus ID:
pistato.v30172630
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger, C3HC4 type family protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 41374993 | 41379799 | - | pistato.v30172630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.85 | 36,009.67 Da | 47.62 | 94.21 | 0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 33 | 81 | 7.58319E-16 | - |
| Pfam | PF12906 | RING-variant domain | 33 | 80 | 5.6E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 29 | 85 | 1.43E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 94 | 1.0E-17 | IPR013083 |
| SMART | SM00744 | ringv_2 | 32 | 81 | 8.9E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 25 | 87 | 20.486994 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G22120.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_031263564.1 | uncharacterized protein LOC116121760 [Pistacia vera] | 0 |
| TrEMBL | A0A5C7HUR4 | RING-CH-type domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_015102 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology