Basic Information
Locus ID:
pistato.v30170380
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 38785597 | 38792172 | - | pistato.v30170380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.19 | 100,511.12 Da | 64.91 | 60.74 | -1.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16647 | mRING-HC-C3HC5_NEU1 | 825 | 865 | 3.55966E-21 | - |
| Pfam | PF13920 | Zinc finger, C3HC4 type (RING finger) | 823 | 870 | 8.0E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 825 | 871 | 1.61E-7 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 805 | 876 | 1.3E-13 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 826 | 865 | 10.748424 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 708 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 143 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 483 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 241 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 528 | 570 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 318 | 355 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 299 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 71 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 585 | 620 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 62 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 198 | 240 | - | - |
| Coils | Coil | Coil | 109 | 129 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G04460.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031265220.1 | uncharacterized protein LOC116123610 [Pistacia vera] | 0 |
| TrEMBL | A0A067E2V1 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g002964mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology