Basic Information
Locus ID:
pistato.v30170310
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Sec12-like protein 1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 38717567 | 38721866 | + | pistato.v30170310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.52 | 43,978.96 Da | 47.76 | 83.29 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 150 | 182 | 4.5E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 117 | 138 | 0.0098 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 59 | 308 | 4.19E-35 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 7 | 317 | 4.1E-47 | IPR015943 |
| SMART | SM00320 | WD40_4 | 102 | 140 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 276 | 316 | 240.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 52 | 91 | 82.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 233 | 272 | 57.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 144 | 182 | 0.0011 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 157 | 186 | 8.937796 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 373 | 392 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G52190.1 | phosphate transporter traffic facilitator1. Encodes a plant specific protein structurally related to the SEC12 proteins of the early secretory pathway. Mutation of PHF1 impairs Pi transport. Expression was detected in all tissues, and was induced by Pi starvation. Localized in endoplasmic reticulum (ER), and mutation of PHF1 resulted in ER retention and reduced accumulation of the plasma membrane PHT1;1 transporter. | 0 |
| RefSeq | XP_031265353.1 | SEC12-like protein 1 [Pistacia vera] | 0 |
| Q8GYE0 | SEC12-like protein 1 OS=Arabidopsis thaliana OX=3702 GN=PHF1 PE=1 SV=2 | 0 | |
| TrEMBL | V4T9A3 | WD_REPEATS_REGION domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10031766mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology