Basic Information
Locus ID:
pistato.v30168130
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 34192227 | 34197488 | + | pistato.v30168130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 94,016.38 Da | 31.39 | 109.56 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00560 | Leucine Rich Repeat | 210 | 231 | 1.1 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 25 | 61 | 4.5E-4 | IPR013210 |
| Pfam | PF13855 | Leucine rich repeat | 448 | 503 | 1.7E-6 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 591 | 650 | 2.8E-7 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 88 | 144 | 9.0E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 431 | 676 | 6.12E-52 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 288 | 472 | 2.96E-36 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 765 | 833 | 1.85E-11 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 28 | 283 | 5.87E-55 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 747 | 839 | 2.2E-22 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 175 | 6.1E-42 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 278 | 399 | 2.6E-24 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 176 | 277 | 4.5E-28 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 400 | 685 | 9.5E-81 | IPR032675 |
| SMART | SM00365 | LRR_sd22_2 | 374 | 397 | 120.0 | - |
| SMART | SM00369 | LRR_typ_2 | 637 | 660 | 10.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 159 | 182 | 190.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 111 | 143 | 45.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 637 | 665 | 490.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 255 | 278 | 630.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 183 | 212 | 45.0 | - |
| SMART | SM00369 | LRR_typ_2 | 159 | 183 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 466 | 489 | 270.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 87 | 110 | 7.8 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 255 | 279 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 514 | 538 | 150.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 589 | 613 | 110.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 111 | 135 | 26.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 395 | 420 | 260.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 207 | 231 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 490 | 513 | 45.0 | IPR003591 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 834 | 863 | 9.091537 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 834 | 863 | 9.11028 | IPR002110 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 790 | 813 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 207 | 220 | 3.1E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 162 | 175 | 3.1E-5 | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_031266111.1 | LOW QUALITY PROTEIN: leucine-rich repeat receptor protein kinase EMS1 [Pistacia vera] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067JEQ6 | Protein kinase domain-containing protein OS=Jatropha curcas OX=180498 GN=JCGZ_26138 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |