Basic Information
Locus ID:
pistato.v30167950
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Leucine-rich repeat receptor protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 33569134 | 33574013 | + | pistato.v30167950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.09 | 117,007.64 Da | 29.93 | 111.43 | 0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 922 | 995 | 5.8E-12 | IPR001245 |
| Pfam | PF13855 | Leucine rich repeat | 339 | 396 | 2.0E-6 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 23 | 59 | 1.8E-9 | IPR013210 |
| Pfam | PF00560 | Leucine Rich Repeat | 243 | 264 | 1.2 | IPR001611 |
| Pfam | PF13855 | Leucine rich repeat | 86 | 142 | 1.3E-7 | IPR001611 |
| SUPERFAMILY | SSF52058 | L domain-like | 41 | 316 | 8.33E-46 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 996 | 1072 | 9.95E-7 | IPR036770 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 899 | 994 | 4.21E-21 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 557 | 811 | 3.74E-50 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 321 | 550 | 1.09E-38 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 129 | 181 | 1.6E-14 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 314 | 559 | 2.5E-61 | IPR032675 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 882 | 990 | 3.6E-36 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 642 | 700 | 1.8E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 560 | 641 | 2.9E-16 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 256 | 313 | 1.4E-11 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 24 | 128 | 1.2E-29 | IPR032675 |
| Gene3D | G3DSA:1.25.40.20 | - | 991 | 1076 | 9.3E-7 | IPR036770 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 182 | 255 | 5.1E-19 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 701 | 819 | 8.1E-32 | IPR032675 |
| SMART | SM00369 | LRR_typ_2 | 288 | 312 | 410.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 192 | 216 | 31.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 157 | 181 | 19.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 649 | 673 | 11.0 | IPR003591 |
| SMART | SM00248 | ANK_2a | 1047 | 1076 | 0.0021 | IPR002110 |
| SMART | SM00369 | LRR_typ_2 | 85 | 108 | 7.8 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 157 | 183 | 94.0 | - |
| SMART | SM00369 | LRR_typ_2 | 724 | 748 | 280.0 | IPR003591 |
| SMART | SM00365 | LRR_sd22_2 | 407 | 430 | 120.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 592 | 613 | 2.6 | - |
| SMART | SM00365 | LRR_sd22_2 | 109 | 132 | 390.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 240 | 266 | 320.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 288 | 311 | 390.0 | - |
| SMART | SM00365 | LRR_sd22_2 | 649 | 672 | 130.0 | - |
| SMART | SM00369 | LRR_typ_2 | 240 | 264 | 57.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 592 | 616 | 15.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 428 | 453 | 390.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 516 | 540 | 100.0 | IPR003591 |
| SMART | SM00369 | LRR_typ_2 | 109 | 133 | 65.0 | IPR003591 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 1047 | 1076 | 10.842607 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 918 | 1076 | 11.849253 | IPR000719 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 1047 | 1076 | 10.87314 | IPR002110 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 924 | 947 | - | IPR017441 |
| PRINTS | PR00019 | Leucine-rich repeat signature | 592 | 605 | 3.2E-5 | - |
| PRINTS | PR00019 | Leucine-rich repeat signature | 160 | 173 | 3.2E-5 | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07280.1 | Leucine-rich repeat transmembrane protein kinase. Encodes EMS1 (EXCESS MICROSPOROCYTES1), a putative leucine-rich repeat receptor protein kinase that controls somatic and reproductive cell fates in Arabidopsis anther. | 0 |
| RefSeq | XP_031266111.1 | LOW QUALITY PROTEIN: leucine-rich repeat receptor protein kinase EMS1 [Pistacia vera] | 0 |
| Q9LYN8 | Leucine-rich repeat receptor protein kinase EMS1 OS=Arabidopsis thaliana OX=3702 GN=EMS1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A7J7I4M9 | Protein kinase domain-containing protein OS=Camellia sinensis OX=4442 GN=HYC85_001179 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 4 | jg12909, jg14016, jg2319, jg889 |
| Anacardiaceae | Pistacia vera | 8 | pistato.v30034580, pistato.v30167950, pistato.v30168050 ... |
| Apiaceae | Apium graveolens | 1 | Ag2G01986 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G03190 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G07280.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012465m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g35610.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g053610.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G2102 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G2175 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.2700 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00010232 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC1BG058770 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-12656, nbisL1-mrna-29200 |
| Rhizophoraceae | Ceriops tagal | 2 | nbisL1-mrna-10442, nbisL1-mrna-7229 |
| Rhizophoraceae | Ceriops zippeliana | 3 | nbisL1-mrna-12927, nbisL1-mrna-12928, nbisL1-mrna-2139 |
| Rhizophoraceae | Kandelia candel | 2 | add.evm.TU.utg000008l.31, add.evm.TU.utg000010l.151 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-17149, nbisL1-mrna-17646 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-20612, nbisL1-mrna-6260 |
| Salicaceae | Populus euphratica | 2 | populus_peu29255, populus_peu30617 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132631870 |
| Solanaceae | Solanum chilense | 1 | SOLCI001805500 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014643 |