Basic Information
Locus ID:
pistato.v30167590
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 32317356 | 32320597 | - | pistato.v30167590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.96 | 111,754.53 Da | 45.49 | 102.12 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16452 | SP-RING_like | 262 | 302 | 1.16571E-13 | - |
| Pfam | PF04564 | U-box domain | 261 | 325 | 6.7E-12 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 259 | 326 | 1.57E-21 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 625 | 987 | 6.72E-25 | IPR016024 |
| SUPERFAMILY | SSF48371 | ARM repeat | 339 | 607 | 8.42E-28 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 257 | 324 | 3.8E-24 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 624 | 838 | 2.2E-14 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 866 | 997 | 4.2E-9 | IPR011989 |
| Gene3D | G3DSA:1.25.10.10 | - | 325 | 623 | 2.4E-32 | IPR011989 |
| Gene3D | G3DSA:1.20.930.20 | - | 26 | 132 | 1.6E-5 | IPR036537 |
| SMART | SM00504 | Ubox_2 | 260 | 323 | 4.8E-16 | IPR003613 |
| SMART | SM00185 | arm_5 | 439 | 480 | 13.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 921 | 961 | 84.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 875 | 916 | 41.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 400 | 438 | 6.2 | IPR000225 |
| SMART | SM00185 | arm_5 | 782 | 822 | 27.0 | IPR000225 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 263 | 302 | 9.922256 | IPR001841 |
| ProSiteProfiles | PS50176 | Armadillo/plakoglobin ARM repeat profile. | 451 | 481 | 10.6224 | IPR000225 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 256 | 330 | 18.2416 | IPR003613 |
| Coils | Coil | Coil | 199 | 231 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_031268040.1 | U-box domain-containing protein 43-like [Pistacia vera] | 0 |
| TrEMBL | A0A5C7GWQ3 | RING-type E3 ubiquitin transferase OS=Acer yangbiense OX=1000413 GN=EZV62_024876 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30167590 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G006120 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103712369 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq07G0917 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl07G0960 |
| Salicaceae | Populus euphratica | 2 | populus_peu03893, populus_peu34722 |