Basic Information
Locus ID:
pistato.v30165040
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
lysine-specific demethylase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 23014167 | 23024178 | + | pistato.v30165040 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.35 | 176,151.97 Da | 47.34 | 67.60 | -0.69 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02373 | JmjC domain, hydroxylase | 1500 | 1537 | 1.1E-9 | IPR003347 |
| Pfam | PF10497 | Zinc-finger domain of monoamine-oxidase A repressor R1 | 716 | 778 | 6.9E-5 | IPR018866 |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1030 | 1198 | 5.08E-7 | - |
| SUPERFAMILY | SSF51197 | Clavaminate synthase-like | 1410 | 1576 | 3.16E-18 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1344 | 1563 | 1.9E-59 | - |
| Gene3D | G3DSA:2.60.120.650 | Cupin | 1019 | 1259 | 3.1E-79 | - |
| SMART | SM00384 | AT_hook_2 | 574 | 586 | 20.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 486 | 498 | 33.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 368 | 380 | 10.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 607 | 619 | 20.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 306 | 318 | 11.0 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 686 | 698 | 0.45 | IPR017956 |
| SMART | SM00384 | AT_hook_2 | 409 | 421 | 43.0 | IPR017956 |
| SMART | SM00558 | cupin_9 | 1131 | 1554 | 8.1E-66 | IPR003347 |
| ProSiteProfiles | PS51184 | JmjC domain profile. | 1150 | 1554 | 22.191801 | IPR003347 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 719 | 766 | 9.907503 | IPR001841 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 5 | 51 | 13.570478 | IPR014977 |
| ProSitePatterns | PS00354 | HMG-I and HMG-Y DNA-binding domain (A+T-hook). | 684 | 694 | - | IPR000637 |
| PRINTS | PR00929 | AT-hook-like domain signature | 572 | 583 | 3.0E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 486 | 496 | 3.0E-5 | IPR017956 |
| PRINTS | PR00929 | AT-hook-like domain signature | 684 | 694 | 3.0E-5 | IPR017956 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 621 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 586 | 611 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 85 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 518 | 535 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 306 | 416 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 543 | 576 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 49 | 84 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 677 | 700 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 332 | 346 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G00990.1 | Transcription factor jumonji (jmjC) domain-containing protein. | 0 |
| RefSeq | XP_031269233.1 | uncharacterized protein LOC116127730 isoform X1 [Pistacia vera] | 0 |
| Q8VYB9 | Lysine-specific demethylase JMJ27 OS=Arabidopsis thaliana OX=3702 GN=JMJ27 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5Q3H0 | RING-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_192240 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology