Basic Information
Locus ID:
pistato.v30164210
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the RecA family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 19510404 | 19515853 | - | pistato.v30164210 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.21 | 46,177.57 Da | 34.45 | 91.34 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00983 | recA | 75 | 395 | 0.0 | IPR013765 |
| Pfam | PF00154 | recA bacterial DNA recombination protein | 78 | 340 | 5.9E-118 | IPR013765 |
| SUPERFAMILY | SSF54752 | RecA protein, C-terminal domain | 340 | 397 | 1.96E-17 | IPR023400 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 76 | 339 | 2.63E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 105 | 407 | 1.6E-103 | IPR027417 |
| SMART | SM00382 | AAA_5 | 127 | 298 | 4.8E-9 | IPR003593 |
| TIGRFAM | TIGR02012 | tigrfam_recA: protein RecA | 75 | 395 | 3.3E-143 | IPR013765 |
| ProSiteProfiles | PS50162 | RecA family profile 1. | 106 | 264 | 29.00738 | IPR020588 |
| ProSiteProfiles | PS50163 | RecA family profile 2. | 269 | 344 | 28.172436 | IPR020587 |
| ProSitePatterns | PS00321 | recA signature. | 283 | 291 | - | IPR020584 |
| PRINTS | PR00142 | RecA protein signature | 369 | 386 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 235 | 264 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 315 | 344 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 197 | 226 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 163 | 192 | 1.6E-75 | IPR013765 |
| PRINTS | PR00142 | RecA protein signature | 280 | 308 | 1.6E-75 | IPR013765 |
| Hamap | MF_00268 | Protein RecA [recA]. | 76 | 401 | 45.049004 | IPR013765 |
Gene Ontology
Biological Process:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79050.1 | recA DNA recombination family protein. | 0 |
| RefSeq | XP_031281410.1 | DNA repair protein recA homolog 1, chloroplastic [Pistacia vera] | 0 |
| Q39199 | DNA repair protein recA homolog 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RECA PE=2 SV=1 | 0 | |
| TrEMBL | V4TLJ5 | DNA repair protein recA homolog 1, chloroplastic OS=Citrus clementina OX=85681 GN=CICLE_v10020181mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology