Basic Information
Locus ID:
pistato.v30161380
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13710802 | 13713520 | + | pistato.v30161380 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 23,454.52 Da | 65.13 | 90.83 | -0.44 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17123 | RING-like zinc finger | 64 | 93 | 4.5E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 64 | 102 | 2.47E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 47 | 114 | 1.3E-11 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 204 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052487562.1 | putative RING-H2 finger protein ATL12 [Gossypium raimondii] | 0 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 0 | |
| TrEMBL | A0A2H5P6A4 | RING-type domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_107570 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30161000, pistato.v30161380 |