Basic Information
Locus ID:
pistato.v30160990
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 13164812 | 13168933 | + | pistato.v30160990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.37 | 39,262.21 Da | 60.58 | 96.64 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 103 | 145 | 1.00289E-14 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 296 | 339 | 7.8939E-15 | - |
| Pfam | PF13639 | Ring finger domain | 102 | 145 | 2.5E-12 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 296 | 339 | 1.5E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 296 | 342 | 2.0E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 102 | 150 | 1.77E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 62 | 151 | 7.7E-21 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 343 | 1.8E-19 | IPR013083 |
| SMART | SM00184 | ring_2 | 103 | 144 | 1.9E-6 | IPR001841 |
| SMART | SM00184 | ring_2 | 297 | 338 | 5.2E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 297 | 339 | 12.592549 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 103 | 145 | 12.69582 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53010.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_021288788.1 | LOW QUALITY PROTEIN: uncharacterized protein LOC110419973 [Herrania umbratica] | 0 |
| Q9C919 | Putative RING-H2 finger protein ATL19 OS=Arabidopsis thaliana OX=3702 GN=ATL19 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6J1AP76 | LOW QUALITY PROTEIN: uncharacterized protein LOC110419973 OS=Herrania umbratica OX=108875 GN=LOC110419973 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 2 | pistato.v30160990, pistato.v30161370 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G53010.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10012307m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp1g39570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB04g056380.2N |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.1613 |