Basic Information
Locus ID:
pistato.v30156990
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 7524853 | 7533124 | - | pistato.v30156990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 98,938.86 Da | 36.73 | 104.52 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 459 | 657 | 3.86848E-51 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 666 | 873 | 2.53992E-106 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 99 | 306 | 2.91801E-101 | - |
| Pfam | PF00005 | ABC transporter | 112 | 233 | 1.3E-11 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 469 | 606 | 7.1E-7 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 677 | 821 | 8.5E-27 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 408 | 662 | 6.54E-24 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 97 | 328 | 1.63E-46 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 666 | 882 | 2.51E-54 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 62 | 340 | 1.3E-66 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 435 | 664 | 4.1E-27 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 665 | 893 | 1.2E-64 | IPR027417 |
| SMART | SM00382 | AAA_5 | 120 | 306 | 2.0E-8 | IPR003593 |
| SMART | SM00382 | AAA_5 | 685 | 867 | 4.8E-10 | IPR003593 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 93 | 329 | 17.933971 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 459 | 645 | 15.549649 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 660 | 890 | 16.80019 | IPR003439 |
| Coils | Coil | Coil | 373 | 394 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_031253303.1 | ABC transporter C family member 3-like [Pistacia vera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | V4TYY2 | ABC-type xenobiotic transporter OS=Citrus clementina OX=85681 GN=CICLE_v10007266mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology