Basic Information
Locus ID:
pistato.v30155660
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 6328287 | 6334923 | - | pistato.v30155660 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.99 | 81,659.54 Da | 39.51 | 92.93 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 44 | 343 | 3.83156E-178 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 349 | 648 | 1.35475E-162 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 51 | 337 | 2.7E-5 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 354 | 642 | 1.0E-28 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 348 | 649 | 1.31E-39 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 43 | 340 | 8.63E-44 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 43 | 342 | 2.4E-39 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 347 | 648 | 9.3E-41 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 44 | 344 | 40.76865 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 348 | 649 | 36.513718 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_031284220.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Pistacia vera] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | B9SSQ8 | glycerophosphodiester phosphodiesterase OS=Ricinus communis OX=3988 GN=RCOM_0046160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology