Basic Information
Locus ID:
pistato.v30155220
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5969625 | 5978661 | + | pistato.v30155220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 143,713.30 Da | 41.18 | 99.81 | 0.03 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03244 | ABCC_MRP_domain2 | 1066 | 1271 | 1.39687E-84 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 178 | 277 | 4.9E-6 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 1087 | 1185 | 1.1E-12 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 427 | 466 | 1.3E-7 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 942 | 1031 | 3.8E-8 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 642 | 735 | 2.4E-10 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 919 | 1035 | 4.32E-13 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 389 | 536 | 3.62E-37 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 137 | 332 | 9.29E-10 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 638 | 734 | 1.18E-17 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 737 | 835 | 1.08E-9 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1058 | 1279 | 6.32E-44 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 898 | 1045 | 3.3E-15 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 131 | 336 | 1.1E-19 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1052 | 1288 | 4.6E-51 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 618 | 739 | 1.2E-19 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 380 | 549 | 2.8E-48 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 776 | 852 | 7.0E-10 | IPR027417 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 174 | 316 | 13.136772 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 619 | 734 | 17.201965 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1068 | 1287 | 12.791941 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 305 | 537 | 15.533024 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 898 | 1031 | 12.944731 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 439 | 453 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 861 | 875 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 853 | 876 | - | - |
| Coils | Coil | Coil | 581 | 602 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_031253303.1 | ABC transporter C family member 3-like [Pistacia vera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IEY6 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_008956 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology