Basic Information
Locus ID:
pistato.v30155200
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5942781 | 5947103 | + | pistato.v30155200 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.30 | 111,307.24 Da | 37.49 | 100.52 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd03250 | ABCC_MRP_domain1 | 129 | 329 | 5.34473E-109 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 757 | 978 | 5.26682E-125 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 440 | 734 | 1.90706E-98 | IPR044726 |
| Pfam | PF00664 | ABC transporter transmembrane region | 442 | 683 | 5.1E-29 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 777 | 925 | 2.9E-29 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 147 | 281 | 3.1E-19 | IPR003439 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1 | 107 | 1.31E-5 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 440 | 740 | 5.49E-53 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 752 | 991 | 4.07E-64 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 126 | 351 | 4.75E-55 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 110 | 361 | 7.0E-75 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 742 | 996 | 9.9E-79 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1 | 109 | 2.4E-12 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 403 | 740 | 2.3E-61 | IPR036640 |
| SMART | SM00382 | AAA_5 | 785 | 971 | 2.0E-11 | IPR003593 |
| SMART | SM00382 | AAA_5 | 156 | 329 | 1.6E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 442 | 722 | 37.912014 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 761 | 994 | 17.913963 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1 | 95 | 11.811497 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 129 | 352 | 22.649168 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 254 | 268 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 412 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 372 | 391 | - | - |
| Coils | Coil | Coil | 397 | 417 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_044482645.1 | ABC transporter C family member 3-like [Mangifera indica] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | V4TYY2 | ABC-type xenobiotic transporter OS=Citrus clementina OX=85681 GN=CICLE_v10007266mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology