Basic Information
Locus ID:
pistato.v30155190
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 5925337 | 5942730 | + | pistato.v30155190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.06 | 378,467.97 Da | 35.87 | 106.20 | 0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 326 | 613 | 3.53612E-100 | IPR044746 |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 948 | 1242 | 9.81543E-87 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 1753 | 2039 | 3.96336E-95 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 2065 | 2265 | 2.76905E-105 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 2684 | 2904 | 4.767E-120 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1265 | 1472 | 8.01297E-113 | - |
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 2374 | 2661 | 4.0429E-78 | IPR044726 |
| CDD | cd03250 | ABCC_MRP_domain1 | 639 | 839 | 4.89972E-108 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 325 | 592 | 2.7E-24 | IPR011527 |
| Pfam | PF00664 | ABC transporter transmembrane region | 951 | 1190 | 1.5E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 2083 | 2217 | 6.3E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 2414 | 2609 | 1.2E-22 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 657 | 791 | 1.9E-18 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 3215 | 3372 | 1.6E-8 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 2704 | 2851 | 1.8E-28 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1285 | 1419 | 5.7E-27 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 1755 | 2019 | 4.1E-23 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 2377 | 2668 | 1.18E-45 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 948 | 1249 | 6.54E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2678 | 2916 | 3.38E-64 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 3205 | 3372 | 1.15E-16 | IPR036640 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 316 | 617 | 1.7E-31 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1259 | 1484 | 2.57E-58 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 636 | 861 | 3.89E-55 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 2066 | 2287 | 5.43E-53 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 1598 | 2043 | 2.09E-31 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 2670 | 2922 | 3.2E-77 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 1747 | 2040 | 4.6E-43 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1250 | 1490 | 7.6E-70 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 2041 | 2302 | 4.3E-72 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 911 | 1248 | 2.1E-57 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 617 | 871 | 7.5E-74 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 3188 | 3378 | 2.0E-21 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 305 | 616 | 1.0E-43 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 2337 | 2667 | 7.3E-54 | IPR036640 |
| SMART | SM00382 | AAA_5 | 666 | 839 | 1.3E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1293 | 1465 | 4.8E-12 | IPR003593 |
| SMART | SM00382 | AAA_5 | 2092 | 2265 | 8.0E-13 | IPR003593 |
| SMART | SM00382 | AAA_5 | 2712 | 2897 | 5.4E-12 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 2376 | 2649 | 31.230495 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 325 | 605 | 32.261055 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2065 | 2288 | 21.86219 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1269 | 1488 | 18.094034 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 950 | 1230 | 35.514351 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 2688 | 2920 | 18.214083 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 639 | 862 | 22.415741 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 3215 | 3373 | 16.597321 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 1754 | 2031 | 32.707882 | IPR011527 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 2190 | 2204 | - | IPR017871 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 764 | 778 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 889 | 920 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 891 | 920 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2304 | 2346 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2321 | 2346 | - | - |
| Coils | Coil | Coil | 905 | 925 | - | - |
| Coils | Coil | Coil | 2331 | 2351 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_031253310.1 | ABC transporter C family member 3-like isoform X1 [Pistacia vera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2H5P5L2 | ABC-type xenobiotic transporter (Fragment) OS=Citrus unshiu OX=55188 GN=CUMW_106090 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology