Basic Information
Locus ID:
pistato.v30153960
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
glycerophosphoryl diester phosphodiesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4201648 | 4209557 | + | pistato.v30153960 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.96 | 77,358.91 Da | 35.46 | 95.86 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08603 | GDPD_SHV3_repeat_1 | 8 | 307 | 3.74857E-177 | - |
| CDD | cd08604 | GDPD_SHV3_repeat_2 | 313 | 611 | 5.03196E-160 | - |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 318 | 607 | 2.4E-29 | IPR030395 |
| Pfam | PF03009 | Glycerophosphoryl diester phosphodiesterase family | 15 | 301 | 8.3E-6 | IPR030395 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 312 | 612 | 3.66E-40 | IPR017946 |
| SUPERFAMILY | SSF51695 | PLC-like phosphodiesterases | 7 | 304 | 2.01E-43 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 311 | 611 | 1.8E-42 | IPR017946 |
| Gene3D | G3DSA:3.20.20.190 | Phosphatidylinositol (PI) phosphodiesterase | 7 | 306 | 1.0E-38 | IPR017946 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 8 | 308 | 39.363873 | IPR030395 |
| ProSiteProfiles | PS51704 | GP-PDE domain profile. | 312 | 612 | 35.774788 | IPR030395 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26690.1 | PLC-like phosphodiesterase family protein. Glycerophosphoryl diester phosphodiesterase-like protein involved in cell wall cellulose accumulation and pectin linking. Impacts root hair, trichome and epidermal cell development. | 0 |
| RefSeq | XP_031284220.1 | glycerophosphodiester phosphodiesterase GDPDL3-like isoform X1 [Pistacia vera] | 0 |
| Q9SZ11 | Glycerophosphodiester phosphodiesterase GDPDL3 OS=Arabidopsis thaliana OX=3702 GN=GDPDL3 PE=2 SV=3 | 0 | |
| TrEMBL | B9SSQ8 | glycerophosphodiester phosphodiesterase OS=Ricinus communis OX=3988 GN=RCOM_0046160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology