Basic Information
Locus ID:
pistato.v30153820
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Retrotransposon gag protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 4048577 | 4060335 | + | pistato.v30153820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.48 | 110,557.42 Da | 55.61 | 57.72 | -0.94 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03732 | Retrotransposon gag protein | 778 | 873 | 3.8E-18 | IPR005162 |
| Pfam | PF03732 | Retrotransposon gag protein | 454 | 549 | 3.8E-18 | IPR005162 |
| Pfam | PF03732 | Retrotransposon gag protein | 148 | 243 | 3.8E-18 | IPR005162 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 582 | 597 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 321 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 46 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 956 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 37 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 598 | 639 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 922 | 949 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 676 | 693 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 667 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 63 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 352 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 276 | 309 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 906 | 921 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_031280836.1 | uncharacterized protein LOC116139300 [Pistacia vera] | 0 |
| TrEMBL | A0A8S0S967 | Uncharacterized protein LOC111377365, partial OS=Olea europaea subsp. europaea OX=158383 GN=OLEA9_A052810 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 1 | Sbi_jg36236 |
| Anacardiaceae | Pistacia vera | 11 | pistato.v30071390, pistato.v30079570, pistato.v30079870 ... |