Basic Information
Locus ID:
pistato.v30153700
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 3893635 | 3899505 | + | pistato.v30153700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 163,470.05 Da | 34.56 | 102.30 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 908 | 1193 | 5.8377E-85 | IPR044726 |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 322 | 599 | 7.27262E-90 | IPR044746 |
| CDD | cd03250 | ABCC_MRP_domain1 | 616 | 816 | 1.15995E-106 | - |
| CDD | cd03244 | ABCC_MRP_domain2 | 1217 | 1437 | 8.02485E-123 | - |
| Pfam | PF00664 | ABC transporter transmembrane region | 918 | 1145 | 1.4E-27 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 634 | 768 | 1.2E-17 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1237 | 1384 | 1.2E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 321 | 588 | 2.0E-20 | IPR011527 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 615 | 838 | 5.61E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 935 | 1200 | 2.35E-48 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1210 | 1449 | 1.56E-63 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 311 | 605 | 2.75E-31 | IPR036640 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 310 | 604 | 1.5E-40 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1202 | 1455 | 3.0E-76 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 611 | 844 | 2.2E-69 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 907 | 1200 | 2.7E-52 | IPR036640 |
| SMART | SM00382 | AAA_5 | 643 | 816 | 1.8E-10 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1245 | 1430 | 2.1E-11 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 321 | 601 | 33.865837 | IPR011527 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 913 | 1182 | 31.949224 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1221 | 1453 | 18.187405 | IPR003439 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 616 | 839 | 22.369057 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 741 | 755 | - | IPR017871 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 855 | 886 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 855 | 872 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13080.1 | multidrug resistance-associated protein 3. encodes an ATP-dependent MRP-like ABC transporter able to transport glutathione-conjugates as well as chlorophyll catabolites. The expression of this gene is upregulated by herbicide safeners such as benoxacor and fenclorim. | 0 |
| RefSeq | XP_031253303.1 | ABC transporter C family member 3-like [Pistacia vera] | 0 |
| Q9LK64 | ABC transporter C family member 3 OS=Arabidopsis thaliana OX=3702 GN=ABCC3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7IEY6 | ABC-type xenobiotic transporter OS=Acer yangbiense OX=1000413 GN=EZV62_008956 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology