Basic Information
Locus ID:
pistato.v30150900
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
High mobility group B protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr3 | 319604 | 323896 | + | pistato.v30150900 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.49 | 35,456.53 Da | 39.30 | 72.84 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 38 | 123 | 7.36994E-51 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 238 | 301 | 1.53912E-19 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 40 | 123 | 7.3E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 238 | 305 | 1.2E-11 | IPR009071 |
| SUPERFAMILY | SSF47095 | HMG-box | 226 | 308 | 2.75E-19 | IPR036910 |
| SUPERFAMILY | SSF46774 | ARID-like | 33 | 133 | 6.54E-31 | IPR036431 |
| Gene3D | G3DSA:1.10.150.60 | - | 24 | 139 | 2.6E-29 | IPR036431 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 221 | 312 | 6.6E-18 | IPR036910 |
| SMART | SM00501 | bright_3 | 37 | 128 | 3.5E-35 | IPR001606 |
| SMART | SM01014 | ARID_2 | 33 | 123 | 3.1E-31 | - |
| SMART | SM00398 | hmgende2 | 237 | 306 | 4.5E-15 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 36 | 127 | 26.345009 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 238 | 305 | 13.66378 | IPR009071 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13350.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 0 |
| RefSeq | XP_031271933.1 | high mobility group B protein 10-like [Pistacia vera] | 0 |
| Q9LTT3 | High mobility group B protein 10 OS=Arabidopsis thaliana OX=3702 GN=HMGB10 PE=1 SV=1 | 0 | |
| TrEMBL | V4UNY3 | High mobility group B protein 10 OS=Citrus clementina OX=85681 GN=CICLE_v10008919mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology