Basic Information
Locus ID:
pistato.v30149750
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc finger protein VAR3
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 27719805 | 27724204 | + | pistato.v30149750 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 48,636.28 Da | 44.67 | 70.00 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 349 | 372 | 1.5E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 310 | 335 | 9.9E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 272 | 295 | 1.8E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 384 | 410 | 2.2E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 302 | 336 | 2.28E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 380 | 411 | 4.19E-5 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 267 | 299 | 2.59E-6 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 346 | 378 | 6.12E-6 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 264 | 300 | 1.6E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 342 | 379 | 3.8E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 381 | 412 | 4.8E-10 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 301 | 339 | 1.0E-13 | - |
| SMART | SM00547 | zf_4 | 351 | 375 | 5.4E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 384 | 408 | 8.7E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 312 | 336 | 1.7E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 273 | 297 | 2.0E-6 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 349 | 378 | 10.387335 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 271 | 300 | 9.359745 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 382 | 411 | 9.766264 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 310 | 339 | 9.879186 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 353 | 372 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 386 | 405 | - | IPR001876 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_044476202.1 | zinc finger protein VAR3, chloroplastic [Mangifera indica] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A8T1N7G3 | Zinc finger protein VAR3, chloroplastic OS=Carya illinoinensis OX=32201 GN=CIPAW_16G093600 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology