Basic Information
Locus ID:
pistato.v30146610
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 21956572 | 21964313 | - | pistato.v30146610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.73 | 137,663.19 Da | 50.96 | 79.07 | -0.34 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12108 | Hr-like | 321 | 449 | 1.0013E-19 | - |
| CDD | cd12108 | Hr-like | 45 | 167 | 1.19188E-32 | - |
| CDD | cd16464 | RING-H2_Pirh2 | 1095 | 1138 | 2.07679E-15 | - |
| CDD | cd12108 | Hr-like | 668 | 828 | 5.44816E-27 | - |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 46 | 169 | 6.7E-12 | IPR012312 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 318 | 451 | 7.2E-8 | IPR012312 |
| Pfam | PF14599 | Zinc-ribbon | 1143 | 1200 | 2.8E-24 | IPR039512 |
| Pfam | PF13639 | Ring finger domain | 1095 | 1137 | 1.8E-6 | IPR001841 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 666 | 829 | 1.3E-6 | IPR012312 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1094 | 1149 | 3.18E-6 | - |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1031 | 1089 | 9.02E-10 | IPR037275 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1089 | 1140 | 1.0E-7 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 1166 | 1209 | 5.2E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 322 | 467 | 2.0E-19 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 37 | 186 | 3.2E-30 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 662 | 923 | 2.2E-22 | - |
| SMART | SM00184 | ring_2 | 1096 | 1137 | 6.5E-4 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1028 | 1095 | 22.134064 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1096 | 1138 | 10.822189 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1006 | 1076 | 19.52335 | IPR008913 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 898 | 919 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 897 | 923 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G18290.1 | zinc finger protein-related. Encodes BRUTUS (BTS), a putative E3 ligase protein with metal ion binding and DNA binding domains, which negatively regulates the response to iron deficiency. | 0 |
| RefSeq | XP_031278576.1 | zinc finger protein BRUTUS [Pistacia vera] | 0 |
| Q8LPQ5 | Zinc finger protein BRUTUS OS=Arabidopsis thaliana OX=3702 GN=BTS PE=1 SV=1 | 0 | |
| TrEMBL | A0A067E372 | Zinc finger protein BRUTUS OS=Citrus sinensis OX=2711 GN=CISIN_1g000878mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology