Basic Information
Locus ID:
pistato.v30146600
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
AMSH-like ubiquitin thioesterase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 21942461 | 21948703 | + | pistato.v30146600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.20 | 61,496.20 Da | 58.93 | 82.26 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08066 | MPN_AMSH_like | 342 | 545 | 3.96401E-101 | IPR044098 |
| Pfam | PF08969 | USP8 dimerisation domain | 10 | 103 | 1.2E-11 | IPR015063 |
| Pfam | PF01398 | JAB1/Mov34/MPN/PAD-1 ubiquitin protease | 341 | 474 | 5.7E-14 | IPR000555 |
| SUPERFAMILY | SSF102712 | JAB1/MPN domain | 342 | 501 | 4.58E-18 | - |
| Gene3D | G3DSA:3.40.140.10 | Cytidine Deaminase, domain 2 | 327 | 545 | 4.5E-67 | - |
| Gene3D | G3DSA:1.20.58.80 | - | 2 | 121 | 1.5E-29 | - |
| SMART | SM00232 | pad1_6 | 342 | 498 | 1.1E-14 | IPR000555 |
| ProSiteProfiles | PS50249 | MPN domain profile. | 343 | 501 | 28.711048 | IPR037518 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 237 | 270 | - | - |
| Coils | Coil | Coil | 91 | 111 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48790.1 | associated molecule with the SH3 domain of STAM 1. | 0 |
| RefSeq | XP_031277668.1 | AMSH-like ubiquitin thioesterase 1 [Pistacia vera] | 0 |
| Q8VYB5 | AMSH-like ubiquitin thioesterase 1 OS=Arabidopsis thaliana OX=3702 GN=AMSH1 PE=2 SV=1 | 0 | |
| TrEMBL | V4U145 | MPN domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10019782mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology