Basic Information
Locus ID:
pistato.v30144610
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 18877057 | 18878916 | + | pistato.v30144610 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.07 | 31,859.84 Da | 53.90 | 103.42 | 0.16 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13445 | RING-type zinc-finger | 53 | 105 | 6.9E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 52 | 110 | 1.73E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 43 | 146 | 2.6E-12 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 53 | 108 | 10.173057 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 72 | 81 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 169 | 189 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G29270.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031249965.1 | uncharacterized protein LOC116107817 [Pistacia vera] | 0 |
| TrEMBL | A0A067EUG2 | RING-type domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g023737mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology