Basic Information
Locus ID:
pistato.v30142500
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Pentatricopeptide repeat-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 11484477 | 11493772 | - | pistato.v30142500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.12 | 71,373.10 Da | 31.09 | 97.22 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 225 | 249 | 8.2E-5 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 256 | 281 | 0.069 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 197 | 224 | 2.4E-6 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 120 | 168 | 1.0E-8 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 284 | 331 | 7.5E-13 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 385 | 433 | 2.3E-8 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 12 | 151 | 1.2E-15 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 334 | 437 | 1.6E-20 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 438 | 529 | 5.6E-6 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 174 | 247 | 1.6E-18 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 248 | 333 | 5.6E-20 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 197 | 224 | 4.9E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 388 | 423 | 1.5E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 225 | 249 | 8.1E-4 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 288 | 320 | 6.7E-6 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 123 | 150 | 5.6E-6 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 121 | 151 | 9.865228 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 386 | 421 | 9.492543 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 285 | 319 | 10.303679 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 192 | 226 | 11.103854 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G47460.1 | Pentatricopeptide repeat (PPR) superfamily protein. | 0 |
| RefSeq | XP_031248509.1 | putative pentatricopeptide repeat-containing protein At5g47460 [Pistacia vera] | 0 |
| Q9FGL1 | Putative pentatricopeptide repeat-containing protein At5g47460 OS=Arabidopsis thaliana OX=3702 GN=PCMP-E103 PE=3 SV=1 | 0 | |
| TrEMBL | A0A5C7H3X5 | DYW_deaminase domain-containing protein OS=Acer yangbiense OX=1000413 GN=EZV62_023676 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg15510 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_14888 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g104380 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24165, Sbi_jg8008 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12032 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010758 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl52378, Sgl57669 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000004423 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0004580, CQ.Regalona.r1.5BG0004990 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30142500 |
| Apiaceae | Apium graveolens | 1 | Ag6G01715 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G30799 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G47460.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10000835m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g12180.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g064050.2N, BniB04g010200.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0044 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0048 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1194 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00004190 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.926, evm.TU.LG17.914 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.338 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22588 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-12290 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20192 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000022l.167 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014200 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-18103 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6536 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132635120 |
| Solanaceae | Solanum chilense | 1 | SOLCI002438100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026631 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14929 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3807 |