Basic Information
Locus ID:
pistato.v30139780
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the histone deacetylase family. HD Type 1 subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 7210133 | 7214523 | - | pistato.v30139780 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 51,329.08 Da | 45.14 | 69.78 | -0.50 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09991 | HDAC_classI | 21 | 328 | 0.0 | - |
| Pfam | PF00850 | Histone deacetylase domain | 35 | 326 | 6.6E-86 | IPR023801 |
| SUPERFAMILY | SSF52768 | Arginase/deacetylase | 16 | 381 | 1.34E-123 | IPR023696 |
| Gene3D | G3DSA:3.40.800.20 | Histone deacetylase domain | 14 | 389 | 5.3E-137 | IPR037138 |
| PIRSF | PIRSF037913 | HDAC_I_euk | 2 | 456 | 8.0E-205 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 103 | 120 | 2.1E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 224 | 237 | 2.1E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 165 | 181 | 2.1E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 241 | 259 | 2.1E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 37 | 54 | 2.1E-61 | IPR003084 |
| PRINTS | PR01271 | Histone deacetylase signature | 124 | 144 | 2.1E-61 | IPR003084 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 146 | 169 | 1.9E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 178 | 193 | 1.9E-24 | IPR000286 |
| PRINTS | PR01270 | Histone deacetylase superfamily signature | 263 | 273 | 1.9E-24 | IPR000286 |
| PRINTS | PR01271 | Histone deacetylase signature | 70 | 88 | 2.1E-61 | IPR003084 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 391 | 458 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 405 | 458 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G63110.1 | histone deacetylase 6. RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing. | 0 |
| RefSeq | XP_031261433.1 | histone deacetylase 6-like [Pistacia vera] | 0 |
| Q9FML2 | Histone deacetylase 6 OS=Arabidopsis thaliana OX=3702 GN=HDA6 PE=1 SV=1 | 0 | |
| TrEMBL | V4TTD6 | Histone deacetylase OS=Citrus clementina OX=85681 GN=CICLE_v10020048mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology