Basic Information
Locus ID:
pistato.v30139490
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
phosphatase 2A 55 kDa regulatory subunit B
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 6803996 | 6808501 | + | pistato.v30139490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.94 | 54,151.01 Da | 43.38 | 84.09 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 217 | 254 | 0.012 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 33 | 358 | 5.68E-27 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 14 | 168 | 1.8E-9 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 171 | 360 | 4.5E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 102 | 142 | 4.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 265 | 305 | 100.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 254 | 0.84 | IPR001680 |
| SMART | SM00320 | WD40_4 | 25 | 60 | 5.4 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 123 | 151 | 8.637032 | IPR001680 |
| ProSitePatterns | PS01024 | Protein phosphatase 2A regulatory subunit PR55 signature 1. | 102 | 116 | - | IPR018067 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 339 | 366 | 2.1E-80 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 39 | 59 | 2.1E-80 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 118 | 146 | 2.1E-80 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 282 | 310 | 2.1E-80 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 254 | 281 | 2.1E-80 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 226 | 253 | 2.1E-80 | IPR000009 |
| PRINTS | PR00600 | Protein phosphatase PP2A 55kDa regulatory subunit signature | 311 | 338 | 2.1E-80 | IPR000009 |
Gene Ontology
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
ko03015 (mRNA surveillance pathway)
map03015 (mRNA surveillance pathway)
ko04071 (Sphingolipid signaling pathway)
map04071 (Sphingolipid signaling pathway)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04151 (PI3K-Akt signaling pathway)
map04151 (PI3K-Akt signaling pathway)
ko04152 (AMPK signaling pathway)
map04152 (AMPK signaling pathway)
ko04390 (Hippo signaling pathway)
map04390 (Hippo signaling pathway)
ko04391 (Hippo signaling pathway - fly)
map04391 (Hippo signaling pathway - fly)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17720.1 | Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B | 0 |
| RefSeq | XP_031287761.1 | serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform-like [Pistacia vera] | 0 |
| Q39247 | Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067G266 | Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Citrus sinensis OX=2711 GN=CISIN_1g010801mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology