Basic Information
Locus ID:
pistato.v30138910
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
RDR2
Description:
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 6196817 | 6202655 | + | pistato.v30138910 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.24 | 128,590.56 Da | 36.64 | 91.22 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00590 | RRM_SF | 10 | 87 | 0.00129421 | - |
| Pfam | PF05183 | RNA dependent RNA polymerase | 385 | 962 | 4.2E-177 | IPR007855 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 7 | 87 | 1.3E-5 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 3 | 81 | 1.6E-5 | IPR012677 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 8 | 91 | 9.183366 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11130.1 | RNA-dependent RNA polymerase 2. Encodes RNA-dependent RNA polymerase that is required for endogenous siRNA (but not miRNA) formation. Nomenclature according to Xie, et al. (2004). | 0 |
| RefSeq | XP_031277521.1 | RNA-dependent RNA polymerase 2 [Pistacia vera] | 0 |
| O82504 | RNA-dependent RNA polymerase 2 OS=Arabidopsis thaliana OX=3702 GN=RDR2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FQX3 | RNA-dependent RNA polymerase OS=Citrus sinensis OX=2711 GN=CISIN_1g001183mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology