Basic Information
Locus ID:
pistato.v30137940
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 5186908 | 5195187 | - | pistato.v30137940 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 146,396.06 Da | 50.90 | 84.34 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16464 | RING-H2_Pirh2 | 1161 | 1204 | 1.81446E-19 | - |
| CDD | cd12108 | Hr-like | 618 | 764 | 6.55323E-23 | - |
| CDD | cd12108 | Hr-like | 37 | 169 | 1.06892E-23 | - |
| Pfam | PF14599 | Zinc-ribbon | 1209 | 1266 | 1.2E-24 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 1032 | 1108 | 6.3E-17 | IPR008913 |
| Pfam | PF01814 | Hemerythrin HHE cation binding domain | 38 | 171 | 5.6E-10 | IPR012312 |
| Pfam | PF13639 | Ring finger domain | 1160 | 1203 | 2.5E-9 | IPR001841 |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 1025 | 1089 | 8.63E-13 | IPR037274 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 1099 | 1153 | 1.44E-14 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1161 | 1212 | 6.36E-9 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 294 | 442 | 1.9E-5 | - |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 37 | 188 | 2.2E-20 | - |
| Gene3D | G3DSA:2.20.28.10 | - | 1233 | 1268 | 2.0E-17 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1158 | 1206 | 2.2E-11 | IPR013083 |
| Gene3D | G3DSA:1.20.120.520 | nmb1532 protein domain like | 611 | 812 | 9.8E-16 | - |
| SMART | SM00184 | ring_2 | 1162 | 1203 | 3.3E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 1098 | 1161 | 25.327036 | IPR017921 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1162 | 1204 | 11.51558 | IPR001841 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 1025 | 1095 | 23.75395 | IPR008913 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G18910.1 | zinc ion binding;zinc ion binding. | 0 |
| RefSeq | XP_031276328.1 | LOW QUALITY PROTEIN: zinc finger protein BRUTUS-like At1g18910 [Pistacia vera] | 0 |
| F4IDY5 | Zinc finger protein BRUTUS-like At1g18910 OS=Arabidopsis thaliana OX=3702 GN=At1g18910 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5C7H1N4 | Zinc finger protein BRUTUS-like At1g18910 OS=Acer yangbiense OX=1000413 GN=EZV62_022926 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology