Basic Information
Locus ID:
pistato.v30135810
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 2827647 | 2830697 | + | pistato.v30135810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 21,182.42 Da | 35.35 | 68.00 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 5 | 104 | 8.17129E-36 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 5 | 104 | 1.8E-30 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 5 | 104 | 2.2E-34 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 2 | 116 | 5.4E-35 | IPR016135 |
| SMART | SM00212 | ubc_7 | 1 | 112 | 3.4E-20 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 1 | 112 | 29.239521 | IPR000608 |
| ProSitePatterns | PS00183 | Ubiquitin-conjugating (UBC) active site signature. | 37 | 53 | - | IPR023313 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 151 | 185 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G41340.2 | - | 0 |
| RefSeq | XP_031259489.1 | ubiquitin-conjugating enzyme E2 4-like isoform X3 [Pistacia vera] | 0 |
| P42749 | Ubiquitin-conjugating enzyme E2 5 OS=Arabidopsis thaliana OX=3702 GN=UBC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A7N2LIF9 | UBC core domain-containing protein OS=Quercus lobata OX=97700 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology