Basic Information
Locus ID:
pistato.v30134830
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1929957 | 1935415 | + | pistato.v30134830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 70,134.85 Da | 44.73 | 76.18 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 375 | 399 | 0.27 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 487 | 518 | 0.0015 | IPR001680 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 39 | 143 | 2.41E-10 | IPR011009 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 320 | 624 | 1.21E-43 | IPR036322 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 6 | 138 | 3.6E-14 | - |
| Gene3D | G3DSA:2.130.10.10 | - | 293 | 626 | 2.2E-116 | IPR015943 |
| SMART | SM00320 | WD40_4 | 310 | 349 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 480 | 518 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 359 | 399 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 529 | 568 | 9.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 437 | 476 | 0.0061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 624 | 260.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 402 | 436 | 78.0 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 487 | 520 | 10.548323 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 366 | 408 | 9.906923 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 487 | 520 | 12.680634 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 505 | 519 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 386 | 400 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 24 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_044486823.1 | protein SPA1-RELATED 2-like [Mangifera indica] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | V4TRZ3 | WD_REPEATS_REGION domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018610mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology