Basic Information
Locus ID:
pistato.v30134820
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1915361 | 1923092 | + | pistato.v30134820 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.93 | 120,289.31 Da | 44.97 | 72.42 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 942 | 973 | 0.0044 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 776 | 1077 | 1.13E-42 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 314 | 591 | 2.07E-13 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 749 | 1081 | 6.3E-115 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 312 | 593 | 5.8E-19 | - |
| SMART | SM00320 | WD40_4 | 857 | 891 | 75.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 814 | 854 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 935 | 973 | 2.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 892 | 931 | 0.0061 | IPR001680 |
| SMART | SM00320 | WD40_4 | 984 | 1023 | 15.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 765 | 804 | 3.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1040 | 1079 | 310.0 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 942 | 975 | 12.881143 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 821 | 863 | 9.97376 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 942 | 975 | 10.706503 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 960 | 974 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 841 | 855 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 28 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 136 | 156 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G11110.1 | SPA1-related 2. Encodes a member of the SPA (suppressor of phyA-105) protein family (SPA1-SPA4). SPA proteins contain an N-terminal serine/threonine kinase-like motif followed by a coiled-coil structure and a C-terminal WD-repeat domain. SPA proteins function redundantly in suppressing photomorphogenesis in dark- and light-grown seedlings. SPA2 primarily regulates seedling development in darkness and has little function in light-grown seedlings or adult plants. | 0 |
| RefSeq | XP_044486823.1 | protein SPA1-RELATED 2-like [Mangifera indica] | 0 |
| Q9T014 | Protein SPA1-RELATED 2 OS=Arabidopsis thaliana OX=3702 GN=SPA2 PE=1 SV=2 | 0 | |
| TrEMBL | V4TRZ3 | WD_REPEATS_REGION domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018610mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology