Basic Information
Locus ID:
pistato.v30134390
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1508504 | 1514615 | + | pistato.v30134390 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 87,123.90 Da | 58.37 | 78.07 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 324 | 367 | 1.179E-17 | - |
| CDD | cd16454 | RING-H2_PA-TM-RING | 707 | 750 | 1.82595E-16 | - |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 436 | 484 | 5.7E-10 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 29 | 94 | 4.9E-14 | IPR025287 |
| Pfam | PF13639 | Ring finger domain | 323 | 367 | 9.0E-14 | IPR001841 |
| Pfam | PF13639 | Ring finger domain | 706 | 750 | 3.9E-13 | IPR001841 |
| Pfam | PF14380 | Wall-associated receptor kinase C-terminal | 189 | 227 | 5.8E-5 | IPR032872 |
| SUPERFAMILY | SSF57850 | RING/U-box | 318 | 369 | 2.02E-20 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 702 | 752 | 1.44E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 670 | 754 | 1.0E-20 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 289 | 371 | 2.6E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 708 | 749 | 3.0E-7 | IPR001841 |
| SMART | SM00184 | ring_2 | 325 | 366 | 5.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 708 | 750 | 12.917115 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 325 | 367 | 12.961374 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 755 | 788 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 396 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G53110.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_031280893.1 | RING-H2 finger protein ATL20-like [Pistacia vera] | 0 |
| P0CH01 | Putative RING-H2 finger protein ATL21A OS=Arabidopsis thaliana OX=3702 GN=ATL21A PE=3 SV=1 | 0 | |
| TrEMBL | A0A1R3K788 | Zinc finger, RING-type OS=Corchorus olitorius OX=93759 GN=COLO4_10697 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology