Basic Information
Locus ID:
pistato.v30134170
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
F-box protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr2 | 1349706 | 1352442 | - | pistato.v30134170 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.60 | 23,016.91 Da | 36.32 | 80.35 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13474 | SnoaL-like domain | 73 | 186 | 1.9E-27 | IPR037401 |
| SUPERFAMILY | SSF81383 | F-box domain | 1 | 87 | 1.64E-14 | IPR036047 |
| SUPERFAMILY | SSF54427 | NTF2-like | 68 | 186 | 9.56E-27 | IPR032710 |
| Gene3D | G3DSA:1.20.1280.50 | - | 1 | 43 | 4.5E-6 | - |
| Gene3D | G3DSA:3.10.450.50 | - | 66 | 195 | 7.4E-33 | - |
| ProSiteProfiles | PS50181 | F-box domain profile. | 1 | 45 | 8.941087 | IPR001810 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G10925.1 | Nuclear transport factor 2 (NTF2) family protein. | 0 |
| RefSeq | XP_031280959.1 | F-box protein SKIP8-like [Pistacia vera] | 0 |
| Q93YV9 | F-box protein SKIP8 OS=Arabidopsis thaliana OX=3702 GN=SKIP8 PE=1 SV=1 | 0 | |
| TrEMBL | V4TLL3 | F-box domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10021394mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 3 | jg37010, jg4715, jg7703 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_15161 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah003907 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g098580 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg24064, Sbi_jg7908 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg12134 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00010670 |
| Amaranthaceae | Suaeda glauca | 3 | Sgl05315, Sgl52254, Sgl57507 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000004973, gene:ENSEOMG00000021713 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0005630, CQ.Regalona.r1.5BG0005910 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30134170 |
| Apiaceae | Apium graveolens | 1 | Ag11G04718 |
| Arecaceae | Cocos nucifera | 2 | COCNU_06G002380, COCNU_14G001260 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103712933, gene-LOC103719178 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2000.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri13G12390 |
| Brassicaceae | Arabidopsis thaliana | 2 | AT4G10925.1, AT4G23960.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10028928m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g06570.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g051440.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G0543 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G0652 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno12g03360 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate09g08020 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.1557 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00005400 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb4G24677, Lb4G24686 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.2010, BH02.2057, CH02.2231 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_1AG0020700, gene-QOZ80_1BG0070550 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0264930.2 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_053312 |
| Poaceae | Oryza coarctata | 2 | Oco01G012390, Oco02G012540 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g36940.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G162400 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0603031 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr02G017850, Chr03G008800, Chr05G016170, Chr08G009750 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G352900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG029190, gene_TRIDC3BG032700 |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G199900.1, TraesCS3B02G224900.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb162420_P001, Zm00001eb356530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-21441, nbis-gene-47359 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10463, Zma_g8045 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG10.127, evm.TU.LG17.126 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc09g05010 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_16_RagTag.66 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-22313 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-4355 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-20417 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000022l.458 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00014246 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-3597 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-6780 |
| Salicaceae | Populus euphratica | 2 | populus_peu03706, populus_peu34553 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132634750 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107028853 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_13852 |
| Tamaricaceae | Tamarix chinensis | 2 | TC01G3096, TC06G0111 |
| Zosteraceae | Zostera marina | 1 | Zosma05g11990.v3.1 |