Basic Information
Locus ID:
pistato.v30131840
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 31135994 | 31152339 | - | pistato.v30131840 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 99,466.99 Da | 38.56 | 88.76 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 2.20852E-90 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 8.9E-20 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 224 | 322 | 8.0E-19 | IPR001650 |
| Pfam | PF09382 | RQC domain | 401 | 497 | 4.4E-22 | IPR018982 |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 397 | 2.8E-13 | IPR032284 |
| Pfam | PF00570 | HRDC domain | 547 | 613 | 1.7E-12 | IPR002121 |
| Pfam | PF14493 | Helix-turn-helix domain | 645 | 741 | 7.8E-19 | IPR029491 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 53 | 338 | 2.08E-54 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 540 | 618 | 6.32E-15 | IPR010997 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 400 | 496 | 4.9E-21 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 400 | 525 | 1.4E-33 | IPR036388 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 5.7E-73 | IPR027417 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 542 | 626 | 1.7E-14 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 399 | 1.9E-53 | IPR027417 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 4.7E-24 | IPR001650 |
| SMART | SM00341 | hrdc7 | 543 | 623 | 0.0089 | IPR002121 |
| SMART | SM00956 | RQC_2 | 404 | 502 | 8.9E-24 | IPR018982 |
| SMART | SM00487 | ultradead3 | 10 | 207 | 1.6E-29 | IPR014001 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 4 | 456 | 2.0E-148 | IPR004589 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 22.863825 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 217 | 364 | 17.997948 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 543 | 623 | 17.293968 | IPR002121 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 840 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 796 | 812 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 814 | 831 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_031248057.1 | uncharacterized protein LOC116105789 [Pistacia vera] | 0 |
| O93530 | Bifunctional 3'-5' exonuclease/ATP-dependent helicase WRN OS=Xenopus laevis OX=8355 GN=wrn PE=1 SV=1 | 0 | |
| TrEMBL | A0A5C7GR66 | ATP-dependent DNA helicase OS=Acer yangbiense OX=1000413 GN=EZV62_026106 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology