Basic Information
Locus ID:
pistato.v30131350
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 27796548 | 27803299 | - | pistato.v30131350 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.18 | 30,081.78 Da | 62.17 | 95.57 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 77 | 125 | 7.04247E-19 | - |
| Pfam | PF12906 | RING-variant domain | 77 | 124 | 5.4E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 72 | 128 | 8.95E-14 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 70 | 129 | 2.8E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 76 | 125 | 2.4E-16 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 69 | 131 | 20.123234 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 42 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50440.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | XP_031272223.1 | E3 ubiquitin-protein ligase MARCH8 [Pistacia vera] | 0 |
| TrEMBL | A0A1R3I0H7 | Zinc finger, RING-CH-type OS=Corchorus capsularis OX=210143 GN=CCACVL1_15923 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology