Basic Information
Locus ID:
pistato.v30130740
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 25423787 | 25431610 | - | pistato.v30130740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.40 | 39,741.65 Da | 48.80 | 76.25 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.57362E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 329 | 364 | 6.5E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 248 | 303 | 3.2E-23 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 150 | 187 | 2.5E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.1E-16 | IPR000626 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 81 | 9.21E-22 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 146 | 197 | 2.02E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 308 | 370 | 5.64E-15 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 244 | 311 | 3.79E-23 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 320 | 368 | 4.6E-24 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 238 | 303 | 1.2E-27 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 142 | 192 | 5.0E-21 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 8.0E-27 | - |
| SMART | SM00727 | CBM | 246 | 289 | 7.6E-6 | IPR006636 |
| SMART | SM00165 | uba_6 | 149 | 189 | 2.2E-4 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-22 | IPR000626 |
| SMART | SM00165 | uba_6 | 329 | 366 | 2.2E-8 | IPR015940 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 372 | 5.4E-134 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.911144 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 147 | 190 | 12.378214 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 327 | 367 | 15.390351 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 323 | 339 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 274 | 296 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 355 | 370 | 1.1E-33 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 340 | 354 | 1.1E-33 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 129 | - | - |
| Coils | Coil | Coil | 275 | 295 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79650.2 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_044494896.1 | ubiquitin receptor RAD23b [Mangifera indica] | 0 |
| Q84L33 | Ubiquitin receptor RAD23b OS=Arabidopsis thaliana OX=3702 GN=RAD23B PE=1 SV=3 | 0 | |
| TrEMBL | A0A2H5PAR9 | Ubiquitin receptor RAD23 OS=Citrus unshiu OX=55188 GN=CUMW_119310 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology