Basic Information
Locus ID:
pistato.v30130630
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Radical SAM superfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 25226766 | 25233852 | + | pistato.v30130630 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.12 | 65,718.41 Da | 44.94 | 91.97 | -0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF57850 | RING/U-box | 511 | 570 | 3.22E-6 | - |
| Gene3D | G3DSA:3.20.20.70 | Aldolase class I | 143 | 215 | 5.7E-13 | IPR013785 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 454 | 494 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60230.1 | Radical SAM superfamily protein. | 0 |
| RefSeq | XP_031264394.1 | uncharacterized protein LOC116122716 isoform X2 [Pistacia vera] | 0 |
| Q74E53 | Dual-specificity RNA methyltransferase RlmN OS=Geobacter sulfurreducens (strain ATCC 51573 / DSM 12127 / PCA) OX=243231 GN=rlmN PE=3 SV=1 | 0 | |
| TrEMBL | V4TPA1 | Radical SAM core domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10031376mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg18328 |
| Aizoaceae | Mesembryanthemum crystallinum | 3 | gene_11178, gene_11179, gene_11180 |
| Amaranthaceae | Atriplex hortensis | 2 | Ah015741, Ah039279 |
| Amaranthaceae | Beta vulgaris | 2 | BVRB_8g189480, BVRB_8g191700 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000011783, gene:ENSEOMG00000033264 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.8BG0013600 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30130630 |
| Apiaceae | Apium graveolens | 1 | Ag10G00005 |
| Arecaceae | Cocos nucifera | 1 | COCNU_11G005490 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103707428 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3430.V1.1 |
| Asteraceae | Flaveria trinervia | 4 | Ftri10G14485, Ftri3G28296, Ftri8G28209, Ftri9G19027 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0430 |
| Casuarinaceae | Casuarina glauca | 3 | Cgl02G0456, Cgl02G0458, Cgl05G2137 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g29670 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.725 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00020104 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb3G18767 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.3762, BH07.3586, CH07.3654 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0148750, gene-QOZ80_2BG0204130 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0623650.1 |
| Poaceae | Oryza coarctata | 2 | Oco03G024120, Oco04G024590 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g55090.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_04G304300, gene-BS78_04G304400 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0202880, Pt_Chr0202900 |
| Poaceae | Sporobolus alterniflorus | 5 | Chr06G000560, Chr09G017820, Chr0G032620, Chr13G002010 ... |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G630200 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G355100.1, TraesCS6B02G387900.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb192530_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39940, nbis-gene-39941 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g14612, Zma_g17318 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g19100 |
| Salicaceae | Populus euphratica | 1 | populus_peu04134 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132633090 |
| Solanaceae | Solanum chilense | 1 | SOLCI002329900 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107014525 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15057_chr08_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G0783 |