Basic Information
Locus ID:
pistato.v30129150
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Short Name:
TPL
Description:
Topless-related protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 20877355 | 20886537 | - | pistato.v30129150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.79 | 124,510.71 Da | 40.14 | 80.86 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 458 | 492 | 3.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 950 | 0.018 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 833 | 1097 | 9.39E-35 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 346 | 667 | 9.71E-41 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 322 | 545 | 7.8E-31 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 547 | 688 | 1.8E-13 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 983 | 1120 | 2.7E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 716 | 982 | 1.9E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 14.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 1.2E-15 | IPR006595 |
| SMART | SM00320 | WD40_4 | 539 | 582 | 22.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1002 | 1043 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 2.7E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 2.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 451 | 492 | 5.3E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 495 | 536 | 0.045 | IPR001680 |
| SMART | SM00320 | WD40_4 | 405 | 445 | 24.0 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 3.1E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 345 | 384 | 12.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 585 | 625 | 0.65 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.297499 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 950 | 11.577833 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 603 | 634 | 8.971213 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 14.141059 | IPR006595 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 458 | 501 | 10.408196 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 950 | 9.678328 | - |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 479 | 493 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1103 | 1134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1110 | 1134 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_031251654.1 | topless-related protein 1 [Pistacia vera] | 0 |
| Q0WV90 | Topless-related protein 1 OS=Arabidopsis thaliana OX=3702 GN=TPR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A5C7IKL7 | TOPLESS OS=Acer yangbiense OX=1000413 GN=EZV62_004359 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology