Basic Information
Locus ID:
pistato.v30128890
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 20507271 | 20509102 | - | pistato.v30128890 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.72 | 28,786.94 Da | 18.55 | 85.32 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 73 | 165 | 4.7E-8 | IPR000719 |
| Pfam | PF00466 | Ribosomal protein L10 | 199 | 243 | 4.4E-7 | IPR001790 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 71 | 164 | 2.74E-15 | IPR011009 |
| SUPERFAMILY | SSF160369 | Ribosomal protein L10-like | 200 | 243 | 3.79E-5 | IPR043141 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 70 | 175 | 2.7E-16 | - |
| Gene3D | G3DSA:3.30.70.1730 | - | 189 | 247 | 2.2E-7 | IPR043141 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 248 | 9.078988 | IPR000719 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G25260.1 | Ribosomal protein L10 family protein. | 0 |
| RefSeq | XP_031282871.1 | inactive serine/threonine-protein kinase At1g67470-like [Pistacia vera] | 0 |
| O80795 | Probable inactive receptor-like protein kinase At1g65250 OS=Arabidopsis thaliana OX=3702 GN=At1g65250 PE=2 SV=1 | 0 | |
| TrEMBL | A0A067EC84 | Protein kinase domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g039895mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 11 | pistato.v30083860, pistato.v30083870, pistato.v30083960 ... |