Basic Information
Locus ID:
pistato.v30125810
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non- clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 14679915 | 14682529 | + | pistato.v30125810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 33,907.03 Da | 18.28 | 81.04 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 12 | 292 | 1.84378E-62 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 127 | 166 | 2.3E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 13 | 38 | 0.052 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 86 | 122 | 2.3E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 48 | 80 | 0.17 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 215 | 252 | 2.1E-7 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 175 | 210 | 3.4E-5 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 4 | 291 | 7.14E-77 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 6 | 295 | 9.3E-107 | IPR015943 |
| SMART | SM00320 | WD40_4 | 41 | 80 | 0.029 | IPR001680 |
| SMART | SM00320 | WD40_4 | 213 | 252 | 1.8E-10 | IPR001680 |
| SMART | SM00320 | WD40_4 | 126 | 166 | 2.0E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 83 | 122 | 1.1E-8 | IPR001680 |
| SMART | SM00320 | WD40_4 | 3 | 38 | 0.46 | IPR001680 |
| SMART | SM00320 | WD40_4 | 169 | 210 | 8.0E-5 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 133 | 169 | 10.495596 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 220 | 255 | 11.339228 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 90 | 122 | 10.416506 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 176 | 219 | 11.243651 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 220 | 261 | 14.351543 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 133 | 175 | 13.148488 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 90 | 122 | 12.513543 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 239 | 253 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 153 | 167 | 2.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 109 | 123 | 2.0E-6 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 197 | 211 | 2.0E-6 | IPR020472 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79990.2 | structural molecules. | 0 |
| RefSeq | XP_044495202.1 | coatomer subunit beta'-3-like [Mangifera indica] | 0 |
| Q9CAA0 | Coatomer subunit beta'-1 OS=Arabidopsis thaliana OX=3702 GN=At1g79990 PE=2 SV=2 | 0 | |
| TrEMBL | A0A067ED64 | WD_REPEATS_REGION domain-containing protein OS=Citrus sinensis OX=2711 GN=CISIN_1g047355mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology