halophFGD

Basic Information

Locus ID: pistato.v30123640

Species & Taxonomic ID: Pistacia vera & 55513

Genome Assembly: GWHBKLD00000000

Description: Belongs to the WD repeat SEC13 family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
chr15	11220909	11223024	+	pistato.v30123640

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.74	32,576.17 Da	35.53	79.22	-0.30

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF00400	WD domain, G-beta repeat	118	155	0.023	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	70	109	1.2E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	211	243	0.073	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	56	278	2.44E-35	IPR036322
Gene3D	G3DSA:2.130.10.10	-	55	293	9.6E-63	IPR015943
SMART	SM00320	WD40_4	68	109	1.9E-7	IPR001680
SMART	SM00320	WD40_4	201	244	1.7E-4	IPR001680
SMART	SM00320	WD40_4	115	156	1.7E-4	IPR001680
SMART	SM00320	WD40_4	245	278	320.0	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	75	109	9.045603	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	75	109	10.775796	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	208	245	8.808332	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	208	245	10.475033	IPR001680

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

KEGG Pathway

KO Term:

K14004 (protein transport protein SEC13)

Pathway:

ko03013 (Nucleocytoplasmic transport) map03013 (Nucleocytoplasmic transport) ko04141 (Protein processing in endoplasmic reticulum) map04141 (Protein processing in endoplasmic reticulum) ko04150 (mTOR signaling pathway) map04150 (mTOR signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G01340.1	Transducin/WD40 repeat-like superfamily protein.	0
RefSeq	XP_044486926.1	protein transport protein SEC13 homolog B-like [Mangifera indica]	0
Swiss-Prot	Q9SRI1	Protein transport protein SEC13 homolog A OS=Arabidopsis thaliana OX=3702 GN=SEC13A PE=1 SV=1	0
TrEMBL	A0A7J7DJP9	Protein transport protein SEC13 B OS=Tripterygium wilfordii OX=458696 GN=HS088_TW06G00753 PE=3 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

No orthogroup found for pistato.v30123640.