Basic Information
Locus ID:
pistato.v30122310
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Belongs to the disease resistance NB-LRR family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 8977569 | 8995516 | - | pistato.v30122310 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.76 | 126,822.31 Da | 46.74 | 93.95 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13855 | Leucine rich repeat | 597 | 654 | 1.2E-6 | IPR001611 |
| Pfam | PF00931 | NB-ARC domain | 163 | 369 | 6.3E-41 | IPR002182 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 152 | 403 | 2.93E-44 | IPR027417 |
| SUPERFAMILY | SSF52058 | L domain-like | 858 | 994 | 1.77E-5 | - |
| SUPERFAMILY | SSF52058 | L domain-like | 500 | 899 | 6.12E-34 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 903 | 1056 | 1.6E-6 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 734 | 902 | 5.2E-13 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 304 | 388 | 1.1E-16 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 144 | 301 | 4.2E-27 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 471 | 705 | 9.9E-32 | IPR032675 |
| PRINTS | PR00364 | Disease resistance protein signature | 175 | 190 | 4.4E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 338 | 352 | 4.4E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 616 | 632 | 4.4E-20 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 246 | 260 | 4.4E-20 | - |
| Coils | Coil | Coil | 26 | 92 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G27190.1 | NB-ARC domain-containing disease resistance protein. | 0 |
| RefSeq | XP_031254302.1 | uncharacterized protein LOC116112287 [Pistacia vera] | 0 |
| Q9T048 | Disease resistance protein At4g27190 OS=Arabidopsis thaliana OX=3702 GN=At4g27190 PE=2 SV=1 | 0 | |
| TrEMBL | A0A2H5QRW5 | AAA domain-containing protein OS=Citrus unshiu OX=55188 GN=CUMW_255870 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 40 | pistato.v30030420, pistato.v30098710, pistato.v30098730 ... |