Basic Information
Locus ID:
pistato.v30122010
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
disease resistance
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 8590785 | 8601029 | - | pistato.v30122010 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.94 | 105,483.28 Da | 45.90 | 100.98 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00931 | NB-ARC domain | 208 | 365 | 1.9E-28 | IPR002182 |
| SUPERFAMILY | SSF52058 | L domain-like | 491 | 900 | 1.05E-33 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 164 | 399 | 1.47E-36 | IPR027417 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 498 | 915 | 7.8E-42 | IPR032675 |
| Gene3D | G3DSA:1.10.8.430 | - | 300 | 391 | 2.3E-14 | IPR042197 |
| Gene3D | G3DSA:3.40.50.300 | - | 157 | 207 | 3.5E-7 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 208 | 298 | 3.7E-11 | IPR027417 |
| PRINTS | PR00364 | Disease resistance protein signature | 612 | 628 | 1.2E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 334 | 348 | 1.2E-14 | - |
| PRINTS | PR00364 | Disease resistance protein signature | 187 | 202 | 1.2E-14 | - |
| Coils | Coil | Coil | 33 | 99 | - | - |
| Coils | Coil | Coil | 424 | 444 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G26090.1 | NB-ARC domain-containing disease resistance protein. Encodes a plasma membrane protein with leucine-rich repeat, leucine zipper, and P loop domains that confers resistance to Pseudomonas syringae infection by interacting with the avirulence gene avrRpt2. RPS2 protein interacts directly with plasma membrane associated protein RIN4 and this interaction is disrupted by avrRpt2. | 0 |
| RefSeq | XP_031255418.1 | probable disease resistance protein At4g27220 [Pistacia vera] | 0 |
| Q42484 | Disease resistance protein RPS2 OS=Arabidopsis thaliana OX=3702 GN=RPS2 PE=1 SV=1 | 0 | |
| TrEMBL | V4T8H5 | AAA domain-containing protein OS=Citrus clementina OX=85681 GN=CICLE_v10018706mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 40 | pistato.v30030420, pistato.v30098710, pistato.v30098730 ... |