Basic Information
Locus ID:
pistato.v30120510
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 6162326 | 6162748 | - | pistato.v30120510 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.62 | 15,482.07 Da | 49.69 | 93.29 | 0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 47 | 90 | 1.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 43 | 96 | 2.45E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 29 | 97 | 5.7E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 48 | 89 | 1.2E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 48 | 90 | 12.061441 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G49230.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_044497586.1 | putative RING-H2 finger protein ATL61 [Mangifera indica] | 0 |
| Q6NQG7 | RING-H2 finger protein ATL78 OS=Arabidopsis thaliana OX=3702 GN=ATL78 PE=2 SV=1 | 0 | |
| TrEMBL | A0A061GE21 | RING-type E3 ubiquitin transferase OS=Theobroma cacao OX=3641 GN=TCM_029258 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Anacardiaceae | Pistacia vera | 1 | pistato.v30120510 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G1093 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G1134 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0062s00026.v1.0 |
| Poaceae | Echinochloa crus-galli | 1 | CH01.3664 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_031833, gene-QYE76_031838 |