Basic Information
Locus ID:
pistato.v30120500
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 6157413 | 6158345 | - | pistato.v30120500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 34,075.90 Da | 79.17 | 71.29 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 108 | 151 | 2.54562E-21 | - |
| Pfam | PF13639 | Ring finger domain | 108 | 151 | 1.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 89 | 157 | 5.18E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 156 | 2.5E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 109 | 150 | 1.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 109 | 151 | 12.459772 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 254 | 310 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 268 | 287 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 290 | 304 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 204 | 241 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_031252514.1 | RING-H2 finger protein ATL3-like [Pistacia vera] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | V4SSD1 | RING-type E3 ubiquitin transferase OS=Citrus clementina OX=85681 GN=CICLE_v10026156mg PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology