Basic Information
Locus ID:
pistato.v30119220
Species & Taxonomic ID:
Pistacia vera & 55513
Genome Assembly:
GWHBKLD00000000
Description:
Oligouridylate-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| chr15 | 4206594 | 4211797 | + | pistato.v30119220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 48,292.26 Da | 51.52 | 81.31 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12619 | RRM2_PUB1 | 143 | 217 | 1.56155E-52 | - |
| CDD | cd12352 | RRM1_TIA1_like | 59 | 129 | 9.54404E-37 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 287 | 347 | 1.3E-6 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 144 | 214 | 5.5E-18 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 59 | 125 | 2.5E-13 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 55 | 221 | 3.33E-44 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 287 | 362 | 6.38E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 1 | 140 | 1.6E-25 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 275 | 359 | 1.2E-13 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 141 | 221 | 2.3E-24 | IPR012677 |
| SMART | SM00360 | rrm1_1 | 58 | 127 | 4.1E-17 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 283 | 350 | 5.4E-7 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 143 | 216 | 3.5E-24 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 278 | 354 | 11.212958 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 57 | 131 | 15.408587 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 142 | 220 | 17.335848 | IPR000504 |
| Coils | Coil | Coil | 6 | 26 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G17370.1 | oligouridylate binding protein 1B. | 0 |
| RefSeq | XP_031262075.1 | oligouridylate-binding protein 1B isoform X2 [Pistacia vera] | 0 |
| Q9LQI9 | Oligouridylate-binding protein 1B OS=Arabidopsis thaliana OX=3702 GN=UBP1B PE=1 SV=1 | 0 | |
| TrEMBL | A0A067FFM6 | Oligouridylate-binding protein 1-like OS=Citrus sinensis OX=2711 GN=CISIN_1g014230mg PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology